Entering edit mode
9.4 years ago
camelbbs
▴
710
Recently I am using the JASPAR to generate the transcriptional factor (TF) binding sites of human. I want to ask how I can get the genomic coordinates of all potential TF binding sites. I checked the download folders "sites" and "bed_files". I see the folder "sites" only contains the information like
>MA0001 AGL3 1
acaaCCATATATAGtagccactgaat
And the folder "bed_files" contains the information of genomic coordinates, but only limit to unknown TF in "sites". I cannot find the downloadable tools that I can run in local.
Can anyone solve this problem or recommend some other databases which contains the coordinates information.
Thanks all