Co-ordinates of folds in protein domains

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9.5 years ago

neerajamurugan • 0

From where can I get information for finding co-ordinates of protein folds present in protein domains

Protein Folds • 1.9k views

ADD COMMENT • link updated 2.2 years ago by Ram 44k • written 9.5 years ago by neerajamurugan • 0

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Search your domain in PFAM, under the structures tab you will find the PDB structures containing your domain of interest.

ADD REPLY • link updated 2.2 years ago by Ram 44k • written 9.5 years ago by venu 7.1k

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For example, my domain of interest is PF00056. From PFAM, I know that there is Rossman fold associated with this domain. (Link). Under the structures tab I'm choosing PDB 1Y6J. If I m downloading the pdb file for this, I get the co-ordinates only for HELIX and SHEETS, not for the entire fold. (Or) Under the structures tab there is a table with column head UniProt residues. Should I take that as co-ordinates of the fold?

ADD REPLY • link updated 2.2 years ago by Ram 44k • written 9.5 years ago by neerajamurugan • 0

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