Venn Diagram for differentially expressed miRNAs

Question

[adnanjaved1988]

Hey Everyone

I was wondering if somebody can help me with Venn Diagram in R. I have excel sheet in which I have group comparisons and their corresponding miRNAs which are either up-regulated or down. I want Venn Diagram representation for this information.

Thanks :)

Group Comparisons          Up-regulated miR     Down-regulated miRNAs

A vs. B                    hsa-miR-29a-3p       has-miR-221-3p,
                                                hsa-miR-29b-3p

A vs. C                    hsa-miR-27a-3p,      hsa-miR-21-5p,
                           hsa-miR-27b-3p       hsa-miR-221-3p,
                                                hsa-miR-222-3p

A vs. D                    hsa-miR-21-5p,
                           hsa-miR-17-5p,
                           hsa-miR-20a,         hsa-miR-214-3p
                           hsa-miR-20b,
                           hsa-miR-29a-3p

A vs. E                    hsa-miR-29a-3p,      hsa-miR-29b-3p,
                           hsa-let-7f-5p,       hsa-let-7a-5p,
                           hsa-miR-20a-5p       hsa-let-7b-5p

B vs. C                    hsa-miR-27a-3p,      hsa-miR-21-5p,
                           hsa-miR-27b-3p,      hsa-miR-221-3p,
                           hsa-miR-29b-3p,      hsa-miR-222-3p
                           hsa-let-7g-5p

B vs. D                    hsa-miR-27a-3p,
                           hsa-miR-27b-3p,
                           hsa-miR-221-3p,
                           hsa-let-7a-5p,       hsa-miR-24-3p
                           hsa-let-7d-5p, and
                           hsa-let-7e-5,
                           hsa-let-7f-5p

B vs. E                    hsa-miR-21-5p        hsa-miR-24-3p

Answer 1

[Deepak Tanwar]

Please try to do a Google search, before posting a question!

You could refer to the following earlier Biostars posts:

How Can I Generate A Venn Diagram In R For A Given Csv File

How to generate a Venn diagram

How to create a Venn diagram using ortholog clusters?

Drawing venn diagram in R

[Charles Warden]

+1 for doing a little homework before posting on Biostars.

That said, I don't think I saw a link to Vennerable amongst those Biostars posts, so you may also want to check out this tutorial:

http://matticklab.com/index.php?title=Weighted_Venn_diagrams_in_R