Question

phylogenetic analysis: 2.5 millions SNPs in 33 samples?

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9.3 years ago

sun.nation ▴ 140

I have huge SNP data set from 33 samples. Any suggestion of software to do phylogenetic tree analysis. I tried MEGA6 and it crashed several times. Thanks

phylogenetic SNP • 1.7k views

ADD COMMENT • link updated 2.1 years ago by Ram 44k • written 9.3 years ago by sun.nation ▴ 140

Ram · Answer 1 · 2015-07-31

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9.3 years ago

SNPsaurus ▴ 50

How about RAxML? http://sco.h-its.org/exelixis/software.html

It has handled much larger populations on a small server, so may work for your needs.

ADD COMMENT • link updated 2.1 years ago by Ram 44k • written 9.3 years ago by SNPsaurus ▴ 50