Question

How to Calculate the genetic distance between SNPs with the positions known

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9.3 years ago

ice4prince ▴ 10

Dear All,

I'm new in bioinformatics. I have the 60 SNPs with their positions(found from NCBI) in excel. Also I have one sample from 3 populations and their haplotypes.

Can I calculate the genetic distance between each two SNPs? What format of files include the information of genetic distance?

Thank you so much!

SNP • 5.1k views

ADD COMMENT • link updated 2.1 years ago by Ram 44k • written 9.3 years ago by ice4prince ▴ 10

Ram · Answer 1 · 2015-08-05

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9.3 years ago

Emily 24k

Have you tried subtraction?

ADD COMMENT • link 9.3 years ago by Emily 24k

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Subtraction can just get a result of the physical distance. Rather than a genetic one.

ADD REPLY • link updated 2.1 years ago by Ram 44k • written 9.3 years ago by ice4prince ▴ 10