Hi all,
I am having a bed file which is the output of 2 bed files but it has given me some overlaps
For example
chr1 1234 1240
chr1 1234 1245
chr1 1235 1245
I wanted to find out all the overlaps and also I want the regions appears only once in my bed file .can some1 help me please
You want to remove the duplicate lines or overlapping regions?
There is no duplicate in that example.
I think she meant overlapping reads/regions. I'll edit the Q