Entering edit mode
9.3 years ago
jaqy
▴
20
Hello,
i have some experimentally validated cis-regulatory element present in a specific promoter. and a set of Consensus motif. please, how can i determine the position from TSS (from literature or i should found the position?
thanks
If you have the motifs and the TSS in bed format ( https://genome.ucsc.edu/FAQ/FAQformat.html#format1 )
You could use bedtools closest ( https://bedtools.readthedocs.org/en/latest/content/tools/closest.html )
something like:
bedtools closest -d -a motifs.bed -b tss.bed