Predictions of genomic breeding values using haplotypes. Softwares?

Question

[Paula Sanchez]

Dear all,

I have worked with genomic predictions using SNPs and I am currently interested in doing genomic predictions using haplotypes. I have seen a few papers on that, but most of them were done using the authors scripts (which are not available). Is there any software available for that? Any suggestion would be very much appreciated.

Thanks

[Devon Ryan]

What sort of predictions are you trying to do? If you're just trying to impute genotypes for uncovered areas, then just google "genotype imputation" for a list of tools.

[Paula Sanchez]

Hey Devon, thank you for you reply. I have already gone imputation. What I'm after is a software to do predictions of genomic breeding values. It could be a Gblup methodology using haplotypes to construct the G matrix. There is a few papers on that, but most of them used their own codes. Cheers.