How to get TCGA sample list containing samples covering user defined platforms
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9.3 years ago
VM ▴ 10

Hi,

​I would like to download the cancer samples from TCGA which covers the 3 platforms say for example namely (methylation) Infinium HumanMethylation450, (CNV), Genome-Wide Human SNP Array 6.0 and (gene expression) Illumina HiSeq 2000 RNA Sequencing is there anyway to see set of TCGA sample id covering all the platforms I am interested in?

Best,
Vijaya

SNP methylation RNA-seq TCGA • 2.5k views
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Entering edit mode
9.3 years ago
VM ▴ 10

I figured it out myself!, after making desired selection in TCGA Home > Download Data > Data Matrix. I just need to check Only show samples with data available for all columns

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