Hi: Does anyone knows of any software that could implement simulation of genetic circuits based on plasmids, promoters, ribosomes, and all that stuff? I have found one called SynBioSS, but if anyone has information about other types of softwares it would be nice. Thanks
Have you searched in the Software Summary page in the SBML home website?
There are many tools, for example iBioSim.
Synthetic biology is kinda an up and coming field. They have stuff like what you are talking about. http://biobricks.org/ is a good introduction to what it's about.
http://openwetware.org/wiki/Resources has links to various resources.
There is one called CircuitsDB, but I don't know if it does the things you need: https://biocluster.di.unito.it/circuits/index.php
But I know CellDesigner had a function for entering equations for rates and such: http://celldesigner.org/
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
version 2.3.6
What exactly do you mean by "simulate"?
Hi, I mean to be able to tune by a software the different concentrations for example of lacI that acts a repressor of pLac, and try to get probable response measures from genetic circuits. I think that the broad name of this technique is synthetic biology