Question

pangenome of mycobacterium

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9.3 years ago

manasa22.reddy ▴ 50

Hi everyone

I have to construct a pan genome considering 65 strains of mycobcterium sp., can anyone suggest what language will be more comfortable for this job, R or perl? And please suggest me a rough outline for constructing pangenome.

gene sequence blast alignment • 1.7k views

ADD COMMENT • link updated 2.2 years ago by Ram 44k • written 9.3 years ago by manasa22.reddy ▴ 50

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Kind of a broad question. Have you at all googled? This might help you: http://www.ncbi.nlm.nih.gov/pubmed/25781462

ADD REPLY • link updated 2.2 years ago by Ram 44k • written 9.3 years ago by Coryza ▴ 430

Ram · Answer 1 · 2015-08-25

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9.3 years ago

HG ★ 1.2k

Hi If you have draft/close genome you can do it using the LS_BSR pipeline.

ADD COMMENT • link updated 2.2 years ago by Ram 44k • written 9.3 years ago by HG ★ 1.2k