Realigner Target Creator step- I have been getting this error with all my dataset, if anyone can help me out? I am quite new with Galaxy, so the error message doent make much sense to me.

Question

[bshurovi1]

 Input files reads and reference have incompatible contigs: No overlapping contigs found.
##### ERROR   reads contigs

Answer 1

[poisonAlien]

Probably chromosome names in reference fasta file does not match the one in your bam file.