COSMIC vcf file contains "N" & "." characters in ALT column

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9.4 years ago

vdtbioinfo • 0

Hi,

I am using COSMIC hg19 vcf file to make hotspot bed file but in ALT column of COSMIC vcf contains N & . characters so software I am using ignores that COSMIC ID while making hotspot bed file. It will be great if anybody could help me.

vcf hotspot-bed cosmic-database • 1.9k views

ADD COMMENT • link updated 2.3 years ago by Ram 44k • written 9.4 years ago by vdtbioinfo • 0

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What software are you using to convert VCF to BED?

ADD REPLY • link updated 2.3 years ago by Ram 44k • written 9.4 years ago by Sean Davis 27k

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