why I can't find my pachage?
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Entering edit mode
9.2 years ago
zizigolu ★ 4.3k

sorry guys,

I typed

source("<a href="http://bioconductor.org/biocLite.R">http://bioconductor.org/biocLite.R</a>")
biocLite("cummeRbund")

after running

install.packages("cummerbund")
Installing package into '/usr/people/home/izadi/R/x86_64-redhat-linux-gnu-library/3.2'
(as 'lib' is unspecified)
Warning in install.packages :
  package 'cummerbund' is not available (for R version 3.2.1)

I'm in rstudio, fedora 64 bit

Do you know the reason please? how I can install this package?

Thanks

software-error cummerbund RNA-Seq • 2.2k views
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2
Entering edit mode

biocLite("cummeRbund") should already install the package. Whats the output of biocLite("cummeRbund")?

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Entering edit mode
9.2 years ago
h.mon 35k

It seems you trying to install it twice (and the second time using the wrong command and package name). The first two lines you say you used:

source("https://bioconductor.org/biocLite.R")
biocLite("cummeRbund")

should already install cummeRbund, provided all dependencies are met. Then install.packages("cummerbund") will try to install it again, looking at the wrong repositories and with the wrong name.

To load a package after you install it:

library("cummeRbund")
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