chip-seq analysis with MACS14

Question

[mary99]

Hello All,

How I can know what is threshold for coverage depth of region to be recognised by MACS14?

Thanks

[Devon Ryan]

What do you mean by "recognized" in this context? MACS14 will recognize single reads, or do you mean "does MACS14 have a general threshold for calling something a peak"? In the latter case, read the associated paper.