Is there a command line example/instruction of the CloudMap workflow published on usegalaxy.org

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9.2 years ago

setempler ▴ 20

Dear community,

I would like to implement a command line shell or python wrapper for the CloudMap workflow (http://hobertlab.org/cloudmap/) galaxy implementation: https://usegalaxy.org/u/gm2123/p/cloudmap). Therefore I want to know which software tools are used and what are the minimum/basic arguments for this analysis. I know I can use the workflow tools from galaxyproject.org to investigate the code, but:

I would like to know if there exists a a web post which shows the summarized command line tool chain used for the CloudMap workflow.

I would appreciate if people could share links or even post an example!

Many thanks.

vcf SNP cloudmap • 1.5k views

ADD COMMENT • link updated 2.2 years ago by Ram 44k • written 9.2 years ago by setempler ▴ 20

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You'll want to instead post this on the Galaxy site.

ADD REPLY • link 9.2 years ago by Devon Ryan 104k

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Thank you for the suggestions. For cross reference: https://biostar.usegalaxy.org/p/14218/

ADD REPLY • link updated 2.2 years ago by Ram 44k • written 9.2 years ago by setempler ▴ 20

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