Question

Ensembl ID gene length GC content

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9.2 years ago

cwhitfield • 0

Hi - Is there a way to get a list of ensembl ID, gene length (transcript length) and GC content.

Thanks

RNA-Seq ensembl • 4.7k views

ADD COMMENT • link updated 2.2 years ago by Ram 44k • written 9.2 years ago by cwhitfield • 0

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Thank you, This is great!

ADD REPLY • link 9.2 years ago by cwhitfield • 0

Ram · Answer 1 · 2015-09-25

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9.2 years ago

Devon Ryan 104k

I wrote some code in R to do that a while back. You're free to just modify it to fit your needs.

ADD COMMENT • link 9.2 years ago by Devon Ryan 104k

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Alternatively, BioMart gives you GC content and transcript length.

ADD REPLY • link updated 2.2 years ago by Ram 44k • written 9.2 years ago by Ashutosh Pandey 12k