Question

find the gene islands

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9.2 years ago

Eva_Maria ▴ 190

I have two genomes - one is in healthy condition and other one is in diseased state. I want to find the gene islands in health condition. How to find this?

gene genome • 2.0k views

ADD COMMENT • link updated 2.2 years ago by Ram 44k • written 9.2 years ago by Eva_Maria ▴ 190

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You don't give enough information: What's a 'genome' : a fasta sequence? Is it annotated? Why do you expect the there will be a specific "island" of genes?

ADD REPLY • link updated 2.2 years ago by Ram 44k • written 9.2 years ago by Pierre Lindenbaum 164k

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No that genome contains fasta sequence only. I want to know about the pathogenic islands

ADD REPLY • link updated 2.2 years ago by Ram 44k • written 9.2 years ago by Eva_Maria ▴ 190

Ram · Answer 1 · 2015-09-26

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9.2 years ago

tiago211287 ★ 1.5k

GIPSy: genomic island prediction software

Check this paper out in http://www.ncbi.nlm.nih.gov/pubmed/26376473

Manual

ADD COMMENT • link updated 2.2 years ago by Ram 44k • written 9.2 years ago by tiago211287 ★ 1.5k