fastqToCA command in Celera Assembler

0

Entering edit mode

9.6 years ago

dahliashvets ▴ 10

I am trying to create the .frg file in order to run the runCA command in the Celera Assembler. I am having no luck though. This is the command that I am trying to run:

~/Desktop/PACBIO_Research/wgs-8.3rc2/Darwin-amd64/bin/fastqToCA -libraryname TEST -reads shortFile.fastq > test.frg

And this is the error that I am getting:

dyld: Library not loaded: /opt/local/lib/libgcc/libgomp.1.dylib
  Referenced from: /Desktop/PACBIO_Research/wgs-8.3rc2/Darwin-amd64/bin/fastqToCA
  Reason: image not found
[1]    1207 trace trap   -libraryname TEST -reads shortFile.fastq > test.frg

I don't understand what the error means by "image not found". Adding the technology tag doesn't make a difference. Any help would be much appreciated! Thank you!

fastq de-novo pacbio celera-assembly fastqToCA • 2.8k views

ADD COMMENT • link updated 2.7 years ago by Ram 45k • written 9.6 years ago by dahliashvets ▴ 10

0

Entering edit mode

Using mac? It's an OS-related error.

ADD REPLY • link updated 2.7 years ago by Ram 45k • written 9.6 years ago by GouthamAtla 12k

0

Entering edit mode

Yes I am using a mac, I have gotten it to run on a mac at work but am trying to now run it at home on my laptop. Any ideas what the error could mean? Thanks!

ADD REPLY • link 9.6 years ago by dahliashvets ▴ 10

0

Entering edit mode

There is no single reason for this errors. Check some solutions from stackoverflow.

ADD REPLY • link 9.6 years ago by GouthamAtla 12k

Login before adding your answer.