Chip-Seq Datasets For Cancer Genome Samples?
2
7
Entering edit mode
12.9 years ago
Ahdf-Lell-Kocks ★ 1.6k

Are there any publicly available Chip-seq datasets for cancer genome samples? I've seen this paper:

Genome-wide Profiling of Chromatin Signatures Reveals Epigenetic Regulation of MicroRNA Genes in Colorectal Cancer

They did H3K4me3, H3K27me3, H3K79me2 for colorectal cancer samples, but I can't find the fastq files in the public read archives.

cancer chip-seq • 5.0k views
ADD COMMENT
4
Entering edit mode
12.9 years ago
Rory ▴ 40

This one has ChIP-seq data for ER binding in 20 breast cancer tumors, with BAM files in GEO:

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10730.html

ADD COMMENT
2
Entering edit mode
12.9 years ago
Pedrosaurio ▴ 90

Looking around the SRA can be useful.

Here you have many datasets, not only including Chip-seq for colorectal cancer

http://www.ncbi.nlm.nih.gov/sra?term=%20Colorectal%20Cancer

ADD COMMENT

Login before adding your answer.

Traffic: 2661 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6