Question

How to perform phylogenetic Tree construction using R-package (ape)

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9.2 years ago

sunilthorat ▴ 30

Dear All, I am new to R and I want to construct phylogenetic tree using either APE or PHANGORN. Can anybody please help me how to do that from the scratch. Thanks in Advance.

Sunil

R • 27k views

ADD COMMENT • link updated 2.2 years ago by Ram 44k • written 9.2 years ago by sunilthorat ▴ 30

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Hi,

This may help if your new to phylogenetic reconstruction in general: http://www.mdpi.com/2079-3197/3/2/177

ADD REPLY • link updated 5.0 years ago by Ram 44k • written 9.1 years ago by moranr ▴ 290

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What have you tried? Where did you get stuck?

ADD REPLY • link updated 2.2 years ago by Ram 44k • written 9.1 years ago by Sean Davis 27k

Ram · Answer 1 · 2015-10-05

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9.1 years ago

samuelmiver ▴ 440

The first result googling "ape r phylogeny tutorial" seems to show how to do phylogenetic trees from scratch:

http://www.phytools.org/eqg/Exercise_3.2/

ADD COMMENT • link updated 2.2 years ago by Ram 44k • written 9.1 years ago by samuelmiver ▴ 440

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Thanks Samuel,

This will help me to learn more and understand APE.

Sunil

ADD REPLY • link 9.1 years ago by sunilthorat ▴ 30

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Happy to help!

ADD REPLY • link 9.1 years ago by samuelmiver ▴ 440