EVS non-reference variants for African-American
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9.2 years ago
reza.jabal ▴ 580

Hello Guys,

The 1000 Genomes consortium published a paper just couple of days ago on conclusion of the project in nature. According to them a typical genome differs from the reference human genome at 4.1 million to 5 million sites and along with that they produced a nice representation of variants frequency per populations.

population chart

As it is expected African populations show greatest number of variants in comparison to other populations, but I am wondering why in the "Exome Variant Server" number of variants for almost every sites is underrepresented for African-American population?

next-gen SNP • 1.7k views
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Can you re-phrase your question? I'm interested, but don't quite understand what you are trying to resolve.

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Sorry for badly written question. I am simply wondering why for each individual gene in EVS, number of variants that are indexed for African-American population is less than European-American population?

Consistent with "out of Africa model of human origins", we would expect greater number of variants per site in African descendant individuals.

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