sample with no replicates using GSEA

Question

[camelbbs]

Hi all,

I want to ask a question about using GSEA. I only have two samples with no replicates. So I found I can only use Gene_set (not the phenotype) for the permutation type.

My question is: Can the result from this option also give us the differentially enriched pathways between the two samples?

Thanks a lot.

Che