Chip-Seq Datasets For Cancer Genome Samples?
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12.9 years ago
Ahdf-Lell-Kocks ★ 1.6k

Are there any publicly available Chip-seq datasets for cancer genome samples? I've seen this paper:

Genome-wide Profiling of Chromatin Signatures Reveals Epigenetic Regulation of MicroRNA Genes in Colorectal Cancer

They did H3K4me3, H3K27me3, H3K79me2 for colorectal cancer samples, but I can't find the fastq files in the public read archives.

cancer chip-seq • 5.0k views
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12.9 years ago
Rory ▴ 40

This one has ChIP-seq data for ER binding in 20 breast cancer tumors, with BAM files in GEO:

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10730.html

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12.9 years ago
Pedrosaurio ▴ 90

Looking around the SRA can be useful.

Here you have many datasets, not only including Chip-seq for colorectal cancer

http://www.ncbi.nlm.nih.gov/sra?term=%20Colorectal%20Cancer

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