Help me choosing a tool to analyze protein-protein interaction

Question

[hbitrifle]

Hello,

I'm very new on proteomic analysis. Right now we have a list of proteins (over 4 thousand) and we want to analyze the interactions among them. Is there a database or software we can use to get the network by simply pasting the list of protein names?

Thanks in advance for all your help!

[joram]

You mean a tool to analyze or a tool to visualize?

Answer 1

[joram]

From Databases:

• GeneMania
• BioGrid
• Intact

Software to visualize and visualize:

• Gephi

Programaticaly:

• Networkx in python, igraph in R...