Tool:Digital Expression Explorer
0
7
Entering edit mode
9.2 years ago
mark.ziemann ★ 1.9k

I'm glad to publicly release Digital Expression Explorer (DEE) which is a database and searchable web interface of processed RNA-seq data. You can search with GEO series numbers and download the count matrix in a matter of seconds (try the demo video). The count matrices can be analysed using online statistical tools like Degust. There is an R function to access the data programmatically, and bulk data downloads are also available. We hope the tool will foster greater re-use of these valuable datasets. I'm happy to field any questions or comments you might have.

Further reading at my blog.

2017 Edit: The DEE site has been taken down by Baker institute but bulk data are still available via google drive here. We are actively working on DEE version 2 as detailed on my blog

2018 Edit: DEE2 beta is now operational. Try it and let us know your suggestions and feedback. http://dee2.io/

RNA-Seq GEO • 3.0k views
ADD COMMENT
1
Entering edit mode

Looks good. Am exploring it right now.

ADD REPLY

Login before adding your answer.

Traffic: 1656 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6