pathaway connection analysis for different tissues

Question

[amoltej]

Hello all,

I am working on non model organism and I have got transcriptomic data for different tissues. I want to find out the metabolic pathway connection between two tissues based on their transcriptome data.

Can someone please suggest me tools or method to do this?

Thank you

Answer 1

[svlachavas]

Dear Amoltej,

you could possibly check this excellent blog for rna-seq. It has many tools you can search and check if suit your analysis for path enrichment

http://www.rna-seqblog.com/category/technology/methods/data-analysis/pathway-analysis/