Dear All,
I am trying to install cutadapt on OS X (Mavericks), Python 2.7.5. I tried all the options under readthedocs, nothing worked and did not find anything that gives me a clue how to fix it.
pip keeps hanging
pip install --user --upgrade cutadapt /Library/Python/2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:90: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning. InsecurePlatformWarning Using cached cutadapt-1.8.3.tar.gz Installing collected packages: cutadapt Running setup.py install for cutadapt
manual installation keeps hanging
python setup.py install --user running install running build running build_py running build_ext building 'cutadapt._align' extension cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c cutadapt/_align.c -o build/temp.macosx-10.9-intel-2.7/cutadapt/_align.o cutadapt/_align.c:3732:21: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32] __pyx_v_self->m = __pyx_t_1; ~ ^~~~~~~~~ cutadapt/_align.c:4139:15: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32] __pyx_v_n = __pyx_t_5; ~ ^~~~~~~~~ cutadapt/_align.c:4437:21: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32] __pyx_v_min_n = __pyx_t_15; ~ ^~~~~~~~~~ cutadapt/_align.c:4583:44: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32] (__pyx_v_column[__pyx_v_i]).origin = __pyx_t_17; ~ ^~~~~~~~~~ cutadapt/_align.c:4657:44: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32] (__pyx_v_column[__pyx_v_i]).origin = __pyx_t_14; ~ ^~~~~~~~~~ cutadapt/_align.c:4898:18: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32] __pyx_v_last = __pyx_t_14; ~ ^~~~~~~~~~ cutadapt/_align.c:5507:41: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32] __pyx_v_length = (__pyx_v_m + __pyx_t_17); ~ ~~~~~~~~~~^~~~~~~~~~~~ cutadapt/_align.c:5725:23: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32] for (__pyx_t_13 = __pyx_v_first_i; __pyx_t_13 < __pyx_t_14; __pyx_t_13+=1) { ~ ^~~~~~~~~~~~~~~ cutadapt/_align.c:5742:35: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32] __pyx_v_length = (__pyx_v_i + __pyx_t_15); ~ ~~~~~~~~~~^~~~~~~~~~~~ cutadapt/_align.c:6463:15: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32] __pyx_v_m = __pyx_t_1; ~ ^~~~~~~~~ cutadapt/_align.c:6473:15: warning: implicit conversion loses integer precision: 'Py_ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32] __pyx_v_n = __pyx_t_1; ~ ^~~~~~~~~- [I tried installing older versions too](http://wiki.bits.vib.be/index.php/Cutadapt) 11 warnings generated. #### and it hangs here until ^C
I tried installing from Github
- I tried installing older Versions
and keeps hanging