Quality control for AB Solid fastq files

Question

[EVR]

HI,

I have fastq files generated from AB solid 3.0 platform. As they reads are in color space, is it advisable to use FASTQC to check the quality control of reads or is there any specific tool for checking the quality control for fastq files from AB solid 3.0 platform?

Thanks in advance

Answer 1

[Antonio R. Franco]

FastQC will work. It did it in my hands. And it will provide with a lot of information