Question

Are the values in geo .soft files log2 transformed or normalized?

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9.1 years ago

english.server ▴ 300

Hi all!

Are the values in geo .soft files log2 transformed? are they normalized? Thanks in advance

geo .soft files • 3.0k views

ADD COMMENT • link updated 5.2 years ago by Biostar 20 • written 9.1 years ago by english.server ▴ 300

score 1 · Accepted Answer · 2015-10-26

1

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9.1 years ago

Devon Ryan 104k

Yes, some of them are log2 transformed, some are normalized, some are neither. Presuming you want to know which, the only way to know with certainty is to read the meta information at the top of the .soft file.

ADD COMMENT • link 9.1 years ago by Devon Ryan 104k

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Thank you very much Devon!

ADD REPLY • link 9.1 years ago by english.server ▴ 300