batch program to convert nucleotide into protein

Question

[Eva_Maria]

Hi

I want to convert 200 nucleotide files into protein with a single line comment. Is any tool or program? Please help me

Answer 1

[Kamil]

See a related question: All Possible Protein Sequence From A Nucleotide Sequence

Answer 2

[Antonio R. Franco]

Look for the script/service dna2pep.py that you can find in the VirtualRibosome free programs

It works in batch with fasta files, with the choice of looking or not for ORF

Answer 3

[Brian Bushnell]

For a single line command, it would be easiest to write a loop or cat them.

For the actual translation, if you have a lot of data, I recommend translate6frames from BBMap, as it is extremely fast:

translate6frames.sh in=file.fna out=file.faa