mm9 gene names to mm10

Question

[ravast]

I have few gene name list (don't have genomic coordinates) which were aligned to mm9 reference genome.is there any way to convert these gene annotation to mm10 gene names.

Answer 1

[karl.stamm]

Gene names don't change between map revisions. Convert to a stable ID and continue ignoring coordinates.

Answer 2

[Ashutosh Pandey]

Official gene symbols and gene ids remain the same between different assemblies for example, mm9 and mm10. There may be a few cases where a RIKEN clone may have been given a new name OR assigned to one of the already existing genes. Otherwise most of the gene names won't change between mm9 and mm10.

Answer 3

[brianpenghe]

You can get the mm9 coordinates of the genes, then use this to convert the coordinates to mm10 and then get the annotations from there