Motif coordinates and cell line secences

Question

[Azhar]

Hi,

I have two questions,

1. I got motifs form a peak file using linux desktop based software, but motifs do not have coordinates, is there any software can give me coordinates with respective Motifs.
2. I want to use HEK293 cell lines for aging conditions. is there any method or protocol for cell line aging and using any TF for chip-seq

Regards

Answer 1

[Alex Reynolds]

You can use FIMO in the MEME suite to search a genome for the motifs you provide.