How to get log ratio from cn.mops segplot function

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9.3 years ago

kezcleal ▴ 160

I have been using cn.mops to call CNVs, and I have been using a useful function 'segplot' which makes a nice graph of the log ratio of the read counts (y-axis) vs the genomic position on the x-axis. An example is given in the documentation: http://bioconductor.org/packages/release/bioc/vignettes/cn.mops/inst/doc/cn.mops.pdf

Is it possible to extract the information which goes into this graph from cn.mops and save it to a csv file for instance, so I can plot elsewhere? I have been unable to find the data associated with this graph in the cn.mops results. Thanks.

next-gen R cn.mops • 2.3k views

ADD COMMENT • link updated 2.3 years ago by Ram 44k • written 9.3 years ago by kezcleal ▴ 160

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Same question. Is there anybody that know how to get the data out of R and into a tab-delimited text file?

ADD REPLY • link updated 5.1 years ago by Ram 44k • written 9.1 years ago by peterpath • 0

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