Extracting Exon intron utr co-ordinate

Question

[rakeshmbb]

Dear all,

Please kindly help me. I have a list of genes in a simple text file. I have whole genome annotation file (.gff3). Now I want to retrieve genomic co-ordinate of the UTR, Exon, intron of genes of my interest only. How can I do this.

[Sean Davis]

What language are you comfortable using? Python and R, for example, both have nice facilities for working with gff files.