PennCNV run error (Can't exec detect_cnv.pl) Linux
0
1
Entering edit mode
9.0 years ago

I am trying to get PennCNV working on my computing server. Here's what I've done, per this document: http://penncnv.openbioinformatics.org/en/latest/user-guide/install/

  • Downloaded + decompressed
  • loaded perl (5.14.2) & R/2.15.2 modules
  • went to kext folder and used make
  • went to penncnv folder and typed perl ./detect_cnv.pl. The usage information appears
  • added to my export PATH = statement in my bashrc file, $HOME/opt/penncnv where the files are located

I then went to the example folder to try to run those, using this document as a guide: http://penncnv.openbioinformatics.org/en/latest/user-guide/startup/

  • Ran perl runex.pl, got usage information
  • Ran perl runex.pl 1, and got Can't exec detect_cnv.pl: (null) at example/runex.pl line 81
  • Ran perl runex.pl -path_detect_cnv ../detect_cnv.pl, same error occurs.
  • Also tried going up to the main penncnv folder and using perl example/runex.pl 1 -path_detect_cnv detect_cnv.pl, but get the same error.

Any suggestions/advice?

Thanks in advance,
Gaius

linux cnv penncnv • 2.8k views
ADD COMMENT

Login before adding your answer.

Traffic: 1866 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6