Entering edit mode
9.0 years ago
gaiusjaugustus
▴
230
I am trying to get PennCNV working on my computing server. Here's what I've done, per this document: http://penncnv.openbioinformatics.org/en/latest/user-guide/install/
- Downloaded + decompressed
- loaded perl (5.14.2) & R/2.15.2 modules
- went to kext folder and used make
- went to penncnv folder and typed
perl ./detect_cnv.pl
. The usage information appears - added to my
export PATH =
statement in my bashrc file,$HOME/opt/penncnv
where the files are located
I then went to the example folder to try to run those, using this document as a guide: http://penncnv.openbioinformatics.org/en/latest/user-guide/startup/
- Ran
perl runex.pl
, got usage information - Ran
perl runex.pl 1
, and gotCan't exec detect_cnv.pl: (null) at example/runex.pl line 81
- Ran
perl runex.pl -path_detect_cnv ../detect_cnv.pl
, same error occurs. - Also tried going up to the main penncnv folder and using
perl example/runex.pl 1 -path_detect_cnv detect_cnv.pl
, but get the same error.
Any suggestions/advice?
Thanks in advance,
Gaius