Did dbSNP not get the memo about hg38 chromosome names?

Question

[Jeremy Leipzig]

I thought everyone was switching over to 'chr1' style chromosome names for hg38. Why do I still see the Ensembl-style chromosome names here?

tabix -l ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/VCF/00-All.vcf.gz
1
2
3
4
5
6
7
8
9
10
11
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13
14
15
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22
X
Y
MT

[Chris Miller]

I never heard that there was any kind of consensus, and FWIW I'd have argued that "chr" prefixes are dumb and should go away. ;)

Answer 1

[DG]

Last I had heard there was a failure with standardizing on the chromosome names as planned. I thought NBCI was going to follow the UCSC convention though, but Ensemble wasn't switching their naming scheme due to worry about breaking existing pipelines, etc.