What software produces VCF files from the .sam input?

Question

[elvissober]

What software produces VCF files from the .sam input? SAMTools or there are some alternatives?

Answer 1

[Pierre Lindenbaum]

Using seqanswers semantic mediawiki:

[[output_format::VCF]] [[input_format::SAM]]  [[Category:Bioinformatics application]]

http://seqanswers.com/w/index.php?title=Special%3AAsk&q=[[output_format%3A%3AVCF]]+[[input_format%3A%3ASAM]]++[[Category%3ABioinformatics+application]]&po=&sort_num=&order_num=ASC&eq=yes&p[format]=broadtable&p[limit]=&p[sort]=&p[offset]=&p[headers]=show&p[mainlabel]=&p[link]=all&p[searchlabel]=&p[intro]=&p[outro]=&p[default]=&p[class]=sortable+wikitable+smwtable&eq=yes

edit: fixed input_format::SAM