Question

Getting TaxID from local BLAST run

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8.9 years ago

irritable_phd_syndrome ▴ 130

I am hosting a local blast server and I am blastxing against the nr database. I was wondering how to get the taxonomic IDs from blastx in that case? Thanks.

RNA-Seq blast • 5.1k views

ADD COMMENT • link updated 2.3 years ago by Ram 44k • written 8.9 years ago by irritable_phd_syndrome ▴ 130

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blastx -help

ADD REPLY • link updated 5.0 years ago by Ram 44k • written 8.9 years ago by 5heikki 11k

Ram · Answer 1 · 2015-12-21

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8.9 years ago

Jon ▴ 360

You should look at this post: Scientific Names In Blast Output And Databases. If it is command line, you should just need to use the -staxids

ADD COMMENT • link updated 5.0 years ago by Ram 44k • written 8.9 years ago by Jon ▴ 360