Entering edit mode
12.9 years ago
Anima Mundi
★
2.9k
Hello,
I would like you to suggest me a tool capable to recognize structural conserved motifs among a MSA of DNA sequences of interest, rather than simply recognize a consensus in the nucleotide sequence.
For example, for the sequences:
1 ATTA
2 GTTG
3 CGGC
The common structure should be XYYX (X, Y are different incognite nucleotides).
Instead, for the sequences:
1 ATTA
2 ACGA
3 AGAA
The common structure should be ANNA. Hope this is clear enough.
Thank you, I will try to understand how DREME works; in case I will mark this as the accepted answer ;).