Hello
Recently, I analyzed genomic features including CNV, indel and SNV across around 50 cell lines. I would like to know the significant factors to give cancerous properties to those cell lines. So, I want to retrieve number of cases from TCGA data. My hypothesis is that if count 0, it is a kind of not significant. I know that someone already post a similar question.(Retreiving Data From Tcga Database)
However, as I have thousands of rows of mutation spots, I really hope to find a program to annotate the number of TCGA cases.
The coordinates columns are below.
- Chromosome
- Location (numeric)
- Reference base information
- Altered base information
- Genes(Gene symbols)
Please, suggest any program or method to make column for TCGA number cases.
Thank you