How to merge two illumina 50k Bovine beadchip data sets. The two datasets have SNP id in different formats.
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8.9 years ago
akang ▴ 110

How to merge two illumina 50k Bovine beadchip data sets. I know it is pretty simple and could be done with plink but the two datasets that I have, have SNP ids in different formats. One has the standard illumina format (Starting with ARS, BTA, UA etc.) while in another dataset the SNP ids are in NCBI format (rs number). Is there a conversion file or something of that sort available?

illumina SNP Merge genotype • 2.4k views
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