protein sequence and regarding blast

Question

[ashamscsoft]

I'm a beginner to bioinformatics. I need to know how I should take the protein sequence from protein data bank(PDB).

And also i need to know that from Blastx can we convert nucleotide sequence to protein sequence. Please clear my doubt as im new to this field.

[ashamscsoft]

Thank u I got it.

Answer 1

[Michael]

I'm a beginner to bioinformatics.

That's ok, but take some time to be very specific and ask one question at a time.

I need to know how I should take the protein sequence from protein data bank(PDB).

You search for the protein in PDB, then you download the sequence, anything else?

And also I need to know that from Blastx can we convert nucleotide sequence to protein sequence.

Yes, it does. It's called translation, did you read the Blast manual?

[ashamscsoft]

Thank u. I know if we give protein name we can get the sequence but i dono where to look for the sequence can u elaborate it plz?

[Michael]

Like... clicking the link "Sequence search"?

https://www.ebi.ac.uk/pdbe-srv/PDBeXplore/sequence/

[Ram]

Rephrasing to sound more professional:

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Thank you. I know that if we give protein name we can get the sequence, but I don't know where exactly to look for the sequence. Can you help me with this please?

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