Prediction of operon in bacterial genomes

Question

[dago]

Is there any tool available for predicting operon in whole bacterial genomes?

I found many papers on the topic, but not tools available.

Answer 1

[2351688559]

You can try DOOR 2.0 database

[dago]

This looks indeed interesting

Answer 2

[jing]

Have you tried Prodigal?

[dago]

well, as far as I know Prodigal is a Gene finder tool, not an operon finding tool.

[2351688559]

Hi! I read your post about COG annotation and operon prediction. Now I 'm facing the same problem. Have you got your problems solved? I guess I may need your help! Thanks!

[dago]

Hi, sorry for the late answer. I guess that looking at the questions on biostars you can find the answer you need. Otherwise you can open another post and I am sure you will get help.

[2351688559]

Hi! How are you?

Have you got your operon predicted? Would you mind telling me what you are going to do with the predictions? I have got my predictions, but I have difficulties on how to analyze them.

Thank you!