Entering edit mode
8.8 years ago
dina.hesham139
▴
170
Hey,
I mapped my fastq files using STAR. The output now is a sorted bam files. I wanted to try Stringtie instead of cufflinks.
But since my output doesn't contain the tag XS, Can Stringtie deal with it ?
Thank you!
Thank you a lot!!
Okay. What if I already mapped without this option, can I still use Stringtie?
hi,
From StringTie Manual page -
So, you would need to redo if you want to use StringTie or Cufflinks.