Entering edit mode
9.0 years ago
moranr
▴
290
Hi,
I am trying to display attributes of a tree. The tree has been loaded in newick format with attributes (annotated in the newick file) e.g.:
"Genes" , "Identical", "Duplicated" etc.
When I try to make an image of the tree with these attributes I get an error. I am able to print the attributes and tree as ascii.
t=Tree('sampleGeneTree.tree', format=1)
ts = TreeStyle()
ts.show_leaf_name = True
def my_layout(node):
#dont include root
if not node.is_leaf() and node.up:
#add attributes
node.add_face(TextFace(node.name), column=1, position="branch-right")
node.add_face(AttrFace(node.Genes, text_prefix="/"), column=2, position="branch-top")
ts.layout_fn = my_layout
ts.show(tre_style=ts)
This gives this error :
AttributeError: 'TreeNode' object has no attribute '10'
10 is the value of the node.Genes.
What am I doing wrong here?
Thanks
Ah, thank you.