Pipeline for RNA-seq analysis

Question

[Chenglin]

Dear all,

Happy New Year!

I am going to analyze RNA-Seq data. Does anyone would like to share the pipeline for RNA-Seq analysis? I will appreciate it very much. Thank you!

[Amitm]

hi,

have you seen this - Rna-Seq Pipeline

[Chenglin]

Thank you very much! I'll take a look.

Answer 1

[GouthamAtla]

May be you should also look at Informatics of RNA-Seq.

[Chenglin]

Thank you very much!

Answer 2

[h.mon]

Check "The simple fool's guide to population genomics via RNA-Seq", available here.

[Chenglin]

Thank you very much!

Answer 3

[Constantine]

Here's a very detailed pipeline

https://benchtobioinformatics.wordpress.com/2014/11/10/rnaseq-pipeline-alignment-to-de-analysis-gsea/