How can I calcualte the sequence identity and coverage form GMAP output bam file?
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8.9 years ago
52Teth ▴ 100

Now I have got a bam file from gmap alignment with data from RNA sequencing. Now I want to get the statistic information about the coverage and identity of every sequence. So is there any tools that can deal with this?Or How can I compute the identity and coverage form sam file?
Thanks a lot for any reply!
gmap alignment coverage identity sam/bam • 2.5k views
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