Question

Genome Assembly for a Beginner

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8.9 years ago

' ▴ 330

I am looking for a website/article/book/resource/anything that will help me learn "genome assembly" from scratch, step-by-step on a given dataset.

Any help would be highly appreciated.

Genome Assembly • 2.3k views

ADD COMMENT • link updated 2.4 years ago by Ram 44k • written 8.9 years ago by ' ▴ 330

Ram · Answer 1 · 2016-01-21

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8.9 years ago

GouthamAtla 12k

This came to my mind immediately. http://www.homolog.us/Tutorials/index.php?p=1.4&s=1

There could be other great review/methods papers.

ADD COMMENT • link updated 2.4 years ago by Ram 44k • written 8.9 years ago by GouthamAtla 12k

Ram · Answer 2 · 2016-01-21

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8.9 years ago

morovatunc ▴ 560

There is one course in courser that is called Algorithms for DNA Sequencing. When I was writing my alignment code, It helped me pretty much. You may look for it.

Good luck!

ADD COMMENT • link updated 5.0 years ago by Ram 44k • written 8.9 years ago by morovatunc ▴ 560

score 0 · Answer 3 · 2016-01-22

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8.9 years ago

poisonAlien ★ 3.2k

Ho to apply de Bruijn graphs to genome assembly. A very well written review. Worth the read.

ADD COMMENT • link 8.9 years ago by poisonAlien ★ 3.2k