Can I convert a .mol to a .pdb
0
0
Entering edit mode
8.8 years ago

I'm having trouble converting .mol to .pdb. I have .mol's of Trametinib and Dabrafenib and I wanna use the .pdb I have of MEK1 and MEK2 but when I try using BABEL to convert the .mol mMaya can't open the .pdb's I get. If anyone can help I would greatly appreciate it thanks!

Trametinib .mol Dabrafenib .pdb • 3.9k views
ADD COMMENT
0
Entering edit mode

Can you explain what do you mean by "can't open the .pdb's"?

ADD REPLY
0
Entering edit mode

mMaya won't open it I keep getting this message.

PDB "Dabrafenib_v3" failed to import correctly. You might try importing with different "import options" (removing bonds can often help). You may also attempt a coarse fix of the file. Many non-ProteinDataBank-derived structures have issues due to their incomplete adherence to the PDB specification. Feel free to send through feedback so we migth be able to help, preferably using the "updates / feedback" button at the bottom of the editor.

I've tried all of the options still won't open it

ADD REPLY
0
Entering edit mode

But did you inspect the file in a text editor what is missing or what mMaya is expecting?

ADD REPLY

Login before adding your answer.

Traffic: 1831 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6